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PopPUNK 2.5.0 documentation
PopPUNK 2.5.0 documentation

Contents:

  • PopPUNK documentation
  • Installation
  • Overview
  • Sketching (--create-db)
  • Data quality control (--qc-db)
  • Fitting new models (--fit-model)
  • Distributing PopPUNK models
  • Query assignment (poppunk_assign)
  • Creating visualisations
  • Minimum spanning trees
  • Subclustering with PopPIPE
  • PopPUNK-web
  • Using GPUs
  • Troubleshooting
  • Scripts
  • Citing PopPUNK
  • Reference documentation
  • Miscellaneous
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