Roadmap#
This document describes our future plans for additions to PopPUNK, pp-sketchlib and BeeBOP and BeeBOP. Tasks are in order of priority.
PopPUNK#
Add full worked tutorials back to the documentation #275.
Make the update pipeline more robust. See #273.
Stable names for lineage/subclustering modes.
Other enhancements listed on the issue page are currently not planned.
pp-sketchlib#
Allow amino-acids as input #89.
Other enhancements listed on the issue page are currently not planned.
BeeBOP#
Update backend database to v8 #42.
Update CI images.
- Add more info on landing page.
News page.
About page.
Methods description.
Add custom cluster names (e.g. GPSCs)
Integration tests for error logging.
- Persist user data.
Persist microreact tokens #41.
Allow user to change or delete tokens
Add linage/subclusters to results page #23.
Report sample quality to user.
Front-end update for large numbers of input files.
Add serotype prediction for S. pneumoniae.
Add multiple species databases.